It is mandatory for businesses to file Goods and Services Tax (GST) returns in India. As important as it may be, filing GST returns is a complex and time-consuming task, especially if you are dealing with a large number of invoices, clients, or transactions on a regular basis. GST return software not only simplifies complex processes but also eliminates manual errors.

GST software and tools help you calculate tax liability, upload invoices, and even file returns on time. In this blog, we’ll explore the best GST software and tools in India for your business.

Why Should You Use the GST Software and Tools?

If you file GST returns manually, you risk making errors. These errors can lead to delays in filing returns as well as penalties and notices from the tax authorities. Here is how an online GST software helps you:

• Improve Accuracy: The GST return software allows you to eliminate errors and improve accuracy by automatically determining your tax and correctly matching invoices.
• Save Time: The software performs all the necessary tasks automatically, including automatic GST return filing, reconciliation, and importing data to save you time for other essential tasks.
• Comply with the GST Rules: The GST compliance tool allows you to coordinate your activities based on all GST regulations, deadlines, and templates.
• Easy Data Management: The tools allow you to manage a business’s purchases, sales, and tax reports in one place.
• Eliminate Human Errors: The GST software eliminates human errors by automating return preparation and submission by pulling data and validating it against GST rules.
• Simplify Filing: Built-in GST filing tools in India match supplier filings (GSTR-2B) with your purchases and flag mismatches for an accurate claim.

Best GST Software & Tools for 2025

Here are some of the best GST return software of 2025:

1. ClearTax GST

ClearTax is among the most well-known GST solutions for businesses of every size. It offers a cloud-based GST return software with AI-powered matching, 3x speed and smart reports. The tool also allows you to readily prepare, file, and reconcile GST returns in a matter of clicks. Here are the key features of ClearTax GST software:

• AI-powered matching and smart reports
• 100% accurate and cloud-based
• Automated invoice matching
• GSTR-1 to GSTR-9 filing assistance
• Mass Excel, Tally import
• Error detection and correction using AI

The cost of ClearTax GST software is ₹40,000 for professionals. This expert pack offers up to 300 GSTIN and 3000 invoices per year. The tool is ideal for individuals who want the best GST online software experience with timely customer care and support.

2. TallyPrime GST

Tally is a reputed accounting and taxation management company that offers reliable GST software for all your compliance needs. It easily handles transactions, returns and compliance. It also creates and exports accurate GST returns for multiple GSTINs. Here are the key features of TallyPrime GST software:

• Integrated GST filing and accounting
• Auto error detection
• Real-time return reconciliation
• Instant GSTR reports generation
• GSTIN-wise GST return generation
• Create and manage multiple GST registrations
• Categorise and record transactions GSTIN-wise
• Track GST return activities with instant report access
• Reconcile GSTR-2B for accurate Input Tax Credit (ITC)

Tally is ideal for businesses that need both accounting and GST solutions within a single software package.

3. Zoho Books

Zoho Books is an accounting and GST compliance software that helps you manage GST, returns, invoices, and expenses. It simplifies everything from invoicing to banking to tax filing. Whether you are a small or large business, the software allows you to stay compliant and automate routine tasks. Here are the key features of Zoho Books:

• GST-compliant accounting for automatic GST calculation
• E-way bills and E-invoices generation
• Automatic GST reconciliation and transaction sorting
• Smart invoicing for preparing professional and tax-compliant invoices
• Scheduling recurring bills and sending automatic payment reminders
• Integrated banking for managing and tracking expenses and vendor bills
• Real-time inventory and expense tracking
• Automatic data backup and cloud storage
• Integration with banks and payment gateways

4. Busy Accounting Software

Busy is a simple and cost-effective accounting software offering full GST functionality. It simplifies GST compliance, accounting and billing. From E-invoices to E-way bills, Busy offers a solution that makes GST management simple and automated. The key features that the GST compliance tool offers are as follows:

• GST invoicing
• Auto E-way bill and E-invoices
• GST filing and return
• GSTR-1, 3B, 4, and 9 return filing
• Reconciliation with GSTR-2A
• GSTIN verification

Busy is suitable for small traders and service providers who require a productive and cost-effective GST filing solution.

5. Marg ERP GST

Marg ERP is an accounting, inventory, and business management software designed for SMEs in India. It facilitates GST-compliance, e-invoicing and end-to-end processes between billing and the end of returns filing. Marg ERP suits firms with large billing volumes and complicated tax forms. The key features of Marg ERP GST are as follows:

• Quick GST invoicing
• E-way bill integration
• Tax summary and reconciliation reports
• Vendor-wise tax liability tracking

Key Features to Look for in a GST Software

When you’re choosing the right GST software for your business, you should get a set of features in the GST software. Here are the key features you must look for in the software:

• Automation: The software must automatically retrieve data, compute tax values, and prepare returns.
• Error Detection: It must identify missing invoices, unmatched transactions, or incorrect information.
• Cloud Access: GST online software on the cloud enables you to work anywhere and still keep your data secure.
• Multi-User Support: It must support accountants, CA or staff managing multiple accounts.
• Integration: Choose tools that integrate commonly used apps like Excel, Tally, and accounting software.
• Customer Support: 24*7 support available makes it easy to get assistance whenever you are lost.

Cost of GST Filing Tools in India

Here’s the breakdown of the cost of GST filing tools in India:

Tool	Price
ClearTax GST software	₹40,000
TallyPrime	1 month: ₹750 3 months: ₹2,138 12 months: ₹8,100 Lifetime: ₹22,500
Zoho Books	Standard: ₹749 Professional: ₹1,499 Premium: ₹2,999 Elite: ₹4,999
Busy	Basic: ₹9,999 Standard: ₹14,999 Enterprise: ₹19,999
Marg ERP	Nano: ₹5,400 Basic: ₹9,999 Silver: ₹13,500 Gold: ₹25,200

How to Choose the Best GST Software for Your Business in 2025?

Here’s an easy step-by-step guide to help you choose the best GST compliance solution for your company:

• Understand Your Needs: Start by understanding whether you want only basic GST support or want all-in-one software that handles everything from start to end.
• Check for Compatibility: The software should integrate easily with your existing tools and systems.
• Ease of Use: Select software with an easy-to-navigate dashboard and intuitive interface.
• Data Security: Choose a cloud-based GST online software that safely stores and encrypts your financial information.
• Customer Support: The company must provide support for easily resolving your issues.
• Trial Period: Test the software first to know whether it suits your workflow and filing requirements.

If you’re a business and are filing GST returns regularly, you should definitely invest in a good GST return software tool. Getting software for your business will save you time and reduce errors while filing GST. The software simplifies compliance and record-keeping. This not only helps you avoid penalties but also improves your chances of successful approval when you apply for a business loan.

Frequently Asked Questions (FAQs)

1. Is GST software available for use through my mobile phone?

Some GST software is available on both computers and mobile phones. You can use Zoho Books, Busy, and Marg ERP, all of which are available to use on mobile phones.

2. Does GST software automatically download data from the GST portal?

Some advanced software, such as ClearTax and Zoho Books, imports data directly from the GST portal to save time.

3. Can I work on the GST software offline?

Software such as Zoho Books, Busy, and Marg ERP work offline, but online submission is achievable only with internet connectivity.

4. Do these software support E-invoicing and E-way bill generation?

Yes, most GST compliance software now comes with built-in features for E-invoicing and the generation of E-way bills.

5. Do GST online tools support multiple GSTINs under a single software?

Yes, high-end GST online tools can handle multiple GSTINs in a single account.

6. Is migration of my current accounting tool data to a new GST utility possible?

Almost all GST tools can import simple Excel or JSON-based data, so migration is not difficult.

7. Do GST utilities automatically charge late fees or interest?

Yes, GST filing software in India will automatically calculate late fees and interest based on filing dates.

8. Can I share GST information safely with my accountant?

Cloud GST software enables you to invite others or provide limited access for accountants to work together safely.

9. Are new GST rules and rates updated automatically?

Yes, these GST compliance software automatically update whenever the government announces tax changes.

10. Can a single GST software be used for both accounting and filing?

Yes, software such as TallyPrime and Zoho Books offer you both accounting and GST filing in a single solution.